PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S25457.10

Common Name

JCGZ_06733, LOC105634421

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 259aa MW: 29540.6 Da PI: 8.2337

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S25457.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.1	7.5e-14	74	126	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N f+ Lr+llP a + kKls +++ ++ +YI +Lq Jcr4S25457.10 74 KKLNHNASERDRRKKMNCLFSSLRSLLPAA--DQMKKLSIPATVSRVLKYIPELQ 126 6789***********************6..49999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.303	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-12	74	130	No hit	No description
SuperFamily	SSF47459	4.45E-15	74	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-13	74	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-11	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-9	79	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MIAFCPPPVF PSYGWPLEDP IPNQQIYFSR ENENNNSTLG QSFHNYLQSH PPDISKLDPS 60 TSFTDYTGDP NMVKKLNHNA SERDRRKKMN CLFSSLRSLL PAADQMKKLS IPATVSRVLK 120 YIPELQKEVE MLLQKKEEIL SEISKQDKHL LNHIAEQRKS NKKSSGSSVV SATQLSDTEI 180 VIQISTHSNN VHTITPFSEI ILHLQEEGFV LINSSSFESS GGRVFYNLLL QMEGTQRLES 240 EALRQKLVSL YERRKGMFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072671.1	0.0	transcription factor ORG2 isoform X1
TrEMBL	A0A067KNN3	0.0	A0A067KNN3_JATCU; Uncharacterized protein
STRING	VIT_08s0007g05300.t01	3e-81	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-54	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105634421

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]