PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S25476.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 207aa    MW: 23704.3 Da    PI: 6.0845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S25476.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-113578755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +ErrRR+++ +++  Lr ++P       + ++Ka+i e A+ YI++Lq
  Jcr4S25476.30 35 HAERRRRQKLSDRLLALRAIVPII-----TNMNKATIIEDAITYIQELQ 78
                   79*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-162693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5382877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-143094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-113082No hitNo description
PfamPF000101.4E-83378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-113483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKELCIPRES SGRGRLGRRR GDYDDTGEFK SKNLHAERRR RQKLSDRLLA LRAIVPIITN  60
MNKATIIEDA ITYIQELQNN VEFLSDQLLE MDASSEEEIK AKIDEIDSAG EMKQYGIMEE  120
VQVTNIDGNK LWIKIILEKK RGRFCRLLEN MTYLGLELTD TNVTTTKGAI LVSKLECTAM  180
FLTSGTYGDT LTVQQTKDLL LEIIRRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11742RRRGDYDDTGEFKSKNLHAERRRRQK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092393.11e-127transcription factor DYT1
TrEMBLA0A067JLF31e-122A0A067JLF3_JATCU; Uncharacterized protein
STRINGcassava4.1_026927m1e-91(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-45bHLH family protein