PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S26153.10

Common Name

JCGZ_00197

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 148aa MW: 17021.6 Da PI: 9.6877

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S26153.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.2	5.2e-12	29	119	13	96
TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 +++++ p +f+++ +++ e + ++t d++g++W+++l++rk++ ++ + W Fv+ gL+ gD v+F+ +++ ++ ++ Jcr4S26153.10 29 EHQFIAPSDFLKKLadlDESGELKEKITSFDRDGKEWTFELSIRKTGIYpkpTLTPGSWHPFVNHFGLRGGDAVIFYIIRNdGARKIQIRG 119 356899***9999883344466789999*******88777666775777799*****************99876766555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-12	14	112	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.77	17	121	IPR003340	B3 DNA binding domain
CDD	cd10017	2.55E-10	18	118	No hit	No description
SMART	SM01019	0.0066	19	121	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.18E-10	19	111	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-9	29	117	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MAKTKLDPEI KSDSMDILCE KSLKKTDLEH QFIAPSDFLK KLADLDESGE LKEKITSFDR 60 DGKEWTFELS IRKTGIYPKP TLTPGSWHPF VNHFGLRGGD AVIFYIIRND GARKIQIRGL 120 RKIIFLGKTT WDEVKKVENH ASTSHYRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021664346.1	5e-39	uncharacterized protein LOC110653034
TrEMBL	A0A067LD26	1e-104	A0A067LD26_JATCU; Uncharacterized protein
STRING	cassava4.1_030218m	1e-43	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15290	3	12

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]