PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S26982.20

Common Name

JCGZ_03725, LOC105632776

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YB

Protein Properties

Length: 221aa MW: 25067.9 Da PI: 6.9361

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S26982.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.3	6.1e-55	42	137	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv plk+yl kyre+egek Jcr4S26982.20 42 KEQDRFLPIANVGRIMKKVSPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVVPLKTYLVKYREVEGEK 137 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-52	37	162	IPR009072	Histone-fold
SuperFamily	SSF47113	4.34E-39	44	162	IPR009072	Histone-fold
Pfam	PF00808	1.0E-27	47	111	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.6E-18	75	93	No hit	No description
PROSITE pattern	PS00685	0	78	94	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.6E-18	94	112	No hit	No description
PRINTS	PR00615	3.6E-18	113	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEEESHASAP NGLNRGSPES PCLKNNNKNN NNGSSNNNNN NKEQDRFLPI ANVGRIMKKV 60 SPANGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDIIWA ITTLGFEDYV 120 VPLKTYLVKY REVEGEKLNI PKQQRTEHRL QQHQQPKQEQ QEQSLLPYNS VYSSTSSLMS 180 QPPFVAADQP FSLTFSPNSI QKQLQQQDQI DSIGHWQDMK L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-43	42	132	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070610.1	1e-165	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	2e-70	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A067KWS3	1e-163	A0A067KWS3_JATCU; Uncharacterized protein
STRING	cassava4.1_024313m	1e-112	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	6e-64	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Entrez Gene	105632776

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]