PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S27009.10
Common NameJCGZ_04693, LOC105634055
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 123aa    MW: 13600.2 Da    PI: 6.54
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S27009.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1872123253
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                    rk+ +++keq + Lee F+++++++ +++e LA++l+L  rqV vWFqNrRa
  Jcr4S27009.10  72 RKKLRLSKEQSRLLEESFRQHHTLNPRQKEALAMQLKLRPRQVEVWFQNRRA 123
                    788899*********************************************8 PP
2HD-ZIP_I/II76.64.2e-2572123152
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 
                    +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRA
  Jcr4S27009.10  72 RKKLRLSKEQSRLLEESFRQHHTLNPRQKEALAMQLKLRPRQVEVWFQNRRA 123
                    69*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1857123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-1858122IPR009057Homeodomain-like
PROSITE profilePS5007116.29368123IPR001356Homeobox domain
SMARTSM003892.3E-870123IPR001356Homeobox domain
CDDcd000867.63E-1571123No hitNo description
PfamPF000461.3E-1572123IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAASPTSSSS LELTISMPGF SSSPSFPSSG EGGFAVKGLD INQIPASGAE EEWITAGMDD  60
EEESTTNGAP PRKKLRLSKE QSRLLEESFR QHHTLNPRQK EALAMQLKLR PRQVEVWFQN  120
RRA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072213.17e-85homeobox-leucine zipper protein HOX3
SwissprotQ8S9N62e-40ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLA0A067L0M82e-83A0A067L0M8_JATCU; Uncharacterized protein
STRINGcassava4.1_022041m1e-73(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-33homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]