PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S28430.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 149aa    MW: 17109 Da    PI: 11.094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S28430.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.5e-161190187
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                   ffkvl   + + ++ l +p  f+++++++   +k  tl+  +g+s ev++   + +++y++++GW+ Fvk +gL++ Df+vF l+++
  Jcr4S28430.20 11 FFKVL--LSDFMEK-LKIPPAFVKKFKKI--MPKAPTLKPNEGKSCEVTI--VNEGDSYFFKRGWNTFVKNQGLETSDFLVFNLVDE 90
                   78888..5555555.99*********877..56679999***********..99*****************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-17694IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-18793IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.5038101IPR003340B3 DNA binding domain
CDDcd100174.94E-11990No hitNo description
SMARTSM010190.00181197IPR003340B3 DNA binding domain
PfamPF023628.1E-141190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MARKPKQVPT FFKVLLSDFM EKLKIPPAFV KKFKKIMPKA PTLKPNEGKS CEVTIVNEGD  60
SYFFKRGWNT FVKNQGLETS DFLVFNLVDE ITFQSGNMSR AGACWKARRA RDFPLRARDL  120
SRNHVDKAMS RHRIADLRPI QFGTPATGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079138.17e-62B3 domain-containing protein Os01g0723500 isoform X1
TrEMBLA0A067KHW42e-60A0A067KHW4_JATCU; Uncharacterized protein
STRINGEOX912741e-27(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-10B3 family protein