PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S28438.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 165aa MW: 18480.4 Da PI: 7.312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S28438.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.8	7e-08	60	120	25	88
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 + + +t+ C + k+ +++++ + r+r++ ++gC ak+ + + dg+ +++k++ eHnH+ Jcr4S28438.10 60 DSRSEFKTYACHRACKAGNNSHN---SMRERPSAHIGCMAKICASSQADGRLRINKVSFEHNHH 120 44455688999999888888777...999**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-5	61	120	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
FDENKSGREF GEVDMRLLLY HALGWSXMEI VHEMGSNRED GNAKETASSE EACDDEGHSD 60 SRSEFKTYAC HRACKAGNNS HNSMRERPSA HIGCMAKICA SSQADGRLRI NKVSFEHNHH 120 APSKACFLVQ HRVIQPHVKR TLEVNDFAGI RACKTFLALV GEFRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065290.1	2e-29	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_020532726.1	2e-29	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A067L9B7	5e-28	A0A067L9B7_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27077	2	3