PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U28942.10

Common Name

GRAS44, JCGZ_12067

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 200aa MW: 22167.3 Da PI: 8.3312

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U28942.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	139.3	3.8e-43	7	193	184	374
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpre 278 ++ e++++++L++ +gEal+ n++l+l ++ + ++ ++L k+l+P++v++ve+e+ +++ F++rf+++l++ysa++dslea++p + Jcr4U28942.10 7 DSDETFRPSALKLVRGEALIMNCMLHLPHFIYRAPDSVA---SFLTGAKTLNPRLVTLVEEEVGPiGDGGFVNRFMDSLHHYSAVYDSLEAGFPMQ 99 5668899********************9966655555...9***************9988************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373 s++r+ vEr++lg++i +a + r e+ ++ ++l+++GFk+ ++s + +qaklll ++ dgyrvee+ + lvlgWk+r+++s+S W Jcr4U28942.10 100 SRARALVERVFLGPRIAGSLARIYRTRGEKDA--GSYGDWLGAVGFKAGNISFANHCQAKLLLGLFN-DGYRVEESgCNRLVLGWKSRRILSASIW 192 ********************99877665..889999***********************.**99578999************ PP GRAS 374 r 374 + Jcr4U28942.10 193 T 193 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.311	1	173	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-40	7	193	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
FHQCRLDSDE TFRPSALKLV RGEALIMNCM LHLPHFIYRA PDSVASFLTG AKTLNPRLVT 60 LVEEEVGPIG DGGFVNRFMD SLHHYSAVYD SLEAGFPMQS RARALVERVF LGPRIAGSLA 120 RIYRTRGEKD AGSYGDWLGA VGFKAGNISF ANHCQAKLLL GLFNDGYRVE ESGCNRLVLG 180 WKSRRILSAS IWTSPSESDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-19	33	193	220	379	Protein SCARECROW
5b3h_A	2e-19	33	193	219	378	Protein SCARECROW
5b3h_D	2e-19	33	193	219	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269\|PubMed:15961668}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961668}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405266	0.0	KM405266.1 Jatropha curcas GRAS44 protein (GRAS44) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078195.1	1e-145	nodulation-signaling pathway 2 protein
Swissprot	Q5NE24	1e-108	NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBL	A0A067KKJ1	1e-143	A0A067KKJ1_JATCU; GRAS44 protein
STRING	XP_006434151.1	1e-122	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6264	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	5e-76	GRAS family protein

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]