PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U29441.20
Common NameJCGZ_16489, LOC105642379
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 241aa    MW: 27767.1 Da    PI: 8.4272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U29441.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.42.3e-39411121128
            NAM  21 kkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk 115
                    +kv++++l++ ++i+e+d+yk++PwdLpkk+  +++ewyfF++rd+ky++g r+nra++sgyWkatg+dk++l++ ++  +g+kk Lvfykgr pk
  Jcr4U29441.20   4 NKVASRTLPA-TIIAELDLYKYNPWDLPKKALFGDDEWYFFTPRDRKYPNGARPNRAAASGYWKATGTDKPILTSrGTLSIGVKKALVFYKGRPPK 98 
                    7889999999.88***************8888899*************************************99845556**************** PP

            NAM 116 gektdWvmheyrl 128
                    g ktdW+mheyrl
  Jcr4U29441.20  99 GIKTDWIMHEYRL 111
                    ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.8641139IPR003441NAC domain
SuperFamilySSF1019416.02E-483139IPR003441NAC domain
PfamPF023651.0E-1526111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MNRNKVASRT LPATIIAELD LYKYNPWDLP KKALFGDDEW YFFTPRDRKY PNGARPNRAA  60
ASGYWKATGT DKPILTSRGT LSIGVKKALV FYKGRPPKGI KTDWIMHEYR LLQTTVAYNP  120
KRKGSMRLDD WVLCRVRQKS SLPRSTWEDR NNPEGYLPEN LSCIEKASSI CLQSSDYYPD  180
TIDTDHFEVT SYDVDTDQQE NFATTVSKNG TDMNFYGLIN NQSNVSNFNC DPWNSHMQCQ  240
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-58514136170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753001e-161KC775300.1 Jatropha curcas NAC transcription factor 022 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082588.11e-174NAC domain-containing protein 67
SwissprotQ9LD447e-66NAC56_ARATH; NAC transcription factor 56
TrEMBLR4N7L11e-173R4N7L1_JATCU; NAC transcription factor 022
STRINGcassava4.1_023969m3e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.13e-68NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]