PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U29448.40
Common NameJCGZ_16445, LOC105642151, WRKY04
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 215aa    MW: 23205.2 Da    PI: 6.6236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U29448.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31134191259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k ver ++dp ++++tYeg+Hnh+
  Jcr4U29448.40 134 GDGFRWRKYGQKVVKGNPYPRSYYRCTGLKCNVRKYVERVSDDPGAFITTYEGKHNHD 191
                    6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32119193IPR003657WRKY domain
SuperFamilySSF1182901.03E-28127193IPR003657WRKY domain
PROSITE profilePS5081133.166128193IPR003657WRKY domain
SMARTSM007746.6E-36133192IPR003657WRKY domain
PfamPF031066.0E-25135191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQGLGIVSDG NGQDKTIALW NNHLNERNES SEGRVENQND IGIPVHLTCQ AKAHPSHDAA  60
GAGPINAGAV TSDNSCGLSG ECDDGGKGLE GDDDEPKSKR RKNDNQSNEA GIHREAAQEP  120
RPVVQNSTET EIVGDGFRWR KYGQKVVKGN PYPRSYYRCT GLKCNVRKYV ERVSDDPGAF  180
ITTYEGKHNH DMPLRGTGSA ASETNSQAPA SRSKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32124193877Probable WRKY transcription factor 4
2lex_A3e-32124193877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700151e-169KC470015.1 Jatropha curcas WRKY transcription factor 04 (WRKY04) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082254.11e-159WRKY transcription factor 44
RefseqXP_012082255.11e-159WRKY transcription factor 44
TrEMBLM9TMC61e-157M9TMC6_JATCU; WRKY transcription factor 04.1
STRINGcassava4.1_007976m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.24e-37WRKY family protein
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]