PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U30818.10

Common Name

JCGZ_12803, LOC105637317

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

ZF-HD

Protein Properties

Length: 253aa MW: 27442.6 Da PI: 8.506

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U30818.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.3	2.9e-31	124	179	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhAas Gg +vDGCgEfmp+ geegta+al+CaAC+CHRnFHR+e + e Jcr4U30818.10 124 VRYRECLKNHAASKGGFVVDGCGEFMPT-GEEGTAEALRCAACQCHRNFHRKEIDGE 179 89***********************8.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-21	124	177	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-29	124	176	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.0E-29	125	176	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.364	126	175	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEVRGQEKGI AMPSSLGCNP TNRDSSSKVP SSNILSAFGE TKEDDHHHHH QNLERYPLFH 60 HHQMNLQNLP LKPTGGPEQT QDPTPAPAMI TAVSANNRVA SVPSRSSSRS PPAPPGPPTS 120 TGLVRYRECL KNHAASKGGF VVDGCGEFMP TGEEGTAEAL RCAACQCHRN FHRKEIDGEH 180 QSAATNSYYK DNNQRNTIPQ QQLATSHPPI SQPSVHYHHR YPHGLTLGAP TTTPAPTIVM 240 TFGGGGSCRR IIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076140.1	0.0	zinc-finger homeodomain protein 6
TrEMBL	A0A067KRE0	0.0	A0A067KRE0_JATCU; Uncharacterized protein
STRING	cassava4.1_032899m	1e-64	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	2e-29	homeobox protein 33

Link Out ? help Back to Top
Entrez Gene	105637317

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]