PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U31454.10

Common Name

JCGZ_08249, LOC105635379

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

BBR-BPC

Protein Properties

Length: 188aa MW: 20764.7 Da PI: 10.4812

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U31454.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	276.8	1.1e-84	9	188	151	301
GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtG 217 k++r+k+ k ka ++kk++ks +kvk+es+d + sk+++k dl+ln++++D+st+P+PvCsCtG Jcr4U31454.10 9 AKSRRGKRSKDAKAMPPNKKTSKSPRKVKRESEDLTkvmfgkshdwkngqdlagggddlnkqlvvSKSDWKGNDLGLNQIAFDDSTMPAPVCSCTG 104 56788999999999999999999999999999995559******************************************************** PP GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 + rqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeGydlsnpvDLk+hWAkHGtn+++ti+ Jcr4U31454.10 105 VHRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGYDLSNPVDLKEHWAKHGTNRYITIK 188 *********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.8E-74	1	188	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.5E-83	7	188	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MIWVGPEAAK SRRGKRSKDA KAMPPNKKTS KSPRKVKRES EDLTKVMFGK SHDWKNGQDL 60 AGGGDDLNKQ LVVSKSDWKG NDLGLNQIAF DDSTMPAPVC SCTGVHRQCY KWGNGGWQSS 120 CCTTTLSMYP LPAVPNKRHA RVGGRKMSGS AFSKLLSRLA AEGYDLSNPV DLKEHWAKHG 180 TNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073849.1	1e-136	protein BASIC PENTACYSTEINE6
Refseq	XP_012073850.1	1e-136	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	1e-81	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A067KPK2	1e-135	A0A067KPK2_JATCU; Uncharacterized protein
STRING	XP_002510492.1	1e-120	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6905	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.3	2e-84	basic pentacysteine 6

Link Out ? help Back to Top
Entrez Gene	105635379

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]