PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U32159.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HSF

Protein Properties

Length: 215aa MW: 22953.6 Da PI: 4.2082

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U32159.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	77.4	2.4e-24	141	199	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k++e++ed+e+++++sws+n +sf+v+d +e++k++LpkyFkh nf+SF+RQLn+Y Jcr4U32159.10 141 FLRKTFEMVEDPETDSTVSWSKNRDSFIVWDAHELSKHLLPKYFKHCNFSSFIRQLNTY 199 9*********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.6E-26	134	199	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.4E-21	137	214	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.08E-22	137	200	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.1E-20	141	199	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-13	141	164	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-13	179	191	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-13	192	204	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MLAPDFESCG DGCGGGGGGG GGGLSPSLSA TFMPKPTQPE EEEPLQSISV KEEEMPVAGS 60 GGSDGGPSSS ASSSLMTTEI ERKAETIKVV TIKEEAGEEY DAGAIGDVDN GVNNNGSSSS 120 SSSVDLPKPM EGLHETGPPP FLRKTFEMVE DPETDSTVSW SKNRDSFIVW DAHELSKHLL 180 PKYFKHCNFS SFIRQLNTYV SFLLLILFVL VFFFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-16	116	199	4	87	Heat shock factor protein 1
5d5v_B	3e-16	116	199	4	87	Heat shock factor protein 1
5d5v_D	3e-16	116	199	4	87	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076960.1	1e-143	heat stress transcription factor A-2
TrEMBL	A0A067KPW6	1e-100	A0A067KPW6_JATCU; Uncharacterized protein
STRING	cassava4.1_005870m	2e-52	(Manihot esculenta)
STRING	cassava4.1_008446m	3e-53	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1592	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	5e-38	heat shock transcription factor A2