PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U32184.20

Common Name

JCGZ_12819, LOC105637416

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YB

Protein Properties

Length: 100aa MW: 11244.8 Da PI: 4.4467

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U32184.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.6	1.7e-14	14	99	5	85
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++lP a v ri+k l + + + kda e + fi ++++ a+d c++ +r+tin+dd+l al ++ f ++veplk+ Jcr4U32184.20 14 AEELPKAIVRRIVKDKLSQcspdgDLIVHKDALVAFSESARIFIHYLSATANDICKESRRQTINADDVLKALEEIEFPEFVEPLKA 99 5789********9986522211335789****************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-28	8	99	IPR009072	Histone-fold
Pfam	PF00808	1.5E-12	16	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.1E-23	17	99	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
EMESENVEKV VSEAEELPKA IVRRIVKDKL SQCSPDGDLI VHKDALVAFS ESARIFIHYL 60 SATANDICKE SRRQTINADD VLKALEEIEF PEFVEPLKAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076258.1	2e-66	DNA polymerase epsilon subunit 3
TrEMBL	A0A067KPT4	5e-65	A0A067KPT4_JATCU; Uncharacterized protein
STRING	XP_010031521.1	2e-51	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-44	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Entrez Gene	105637416

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]