PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U33443.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 236aa    MW: 25852 Da    PI: 8.8401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U33443.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-054971123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C++sF r+++L+rH  +H
  Jcr4U33443.10 49 FFCTQCDRSFLRREHLRRHAAVH 71
                   67*****************9988 PP
2zf-C2H215.83.9e-057799123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C k F+r++ L+rH  tH
  Jcr4U33443.10 77 FTCSVCFKKFTRNDILMRHEATH 99
                   89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-54672IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.23E-124799No hitNo description
PROSITE profilePS5015711.3654976IPR007087Zinc finger, C2H2
SMARTSM003550.0134971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-67799IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.167799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84577104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF577012.75E-6104148IPR001138Zn(2)-C6 fungal-type DNA-binding domain
Gene3DG3DSA:4.10.240.102.4E-4107142IPR001138Zn(2)-C6 fungal-type DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MWHRAKGQCQ DGCWGGKLIW FALAAFVTSI SDVMDGDDAN KSASESRRFF CTQCDRSFLR  60
REHLRRHAAV HAPSGAFTCS VCFKKFTRND ILMRHEATHS TATNGRKQKG LRSCAACVAA  120
RTKCSSTLPC ARCVSKKIEC HPRAQTRRNR TGTGDDSPFS PESSSSIAAI DSMSPVANGY  180
SPPRTNDQSA VQDTAGDIFM PGPISSPEQS TRRPFDPHNQ TPALQEVQNL ALVTVD