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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Jcr4U37661.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family | B3 | ||||||||
| Protein Properties | Length: 146aa MW: 17047.2 Da PI: 9.6889 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 33.5 | 7.3e-11 | 48 | 114 | 33 | 95 |
-SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
B3 33 sktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95
++++t d++g++W+++l++rk+ ++ + W+ Fvk gL++gD v+F+ +++ ++ ++
Jcr4U37661.10 48 KQKITSFDQDGKEWTFRLSIRKNEIYskpTFTPASWRPFVKYFGLRDGDGVIFYIEKDdGARKIQIR 114
45788889**********885554444558888*********************9887566655555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50863 | 9.474 | 1 | 117 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.79E-9 | 45 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 5.3E-10 | 45 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 5.6E-8 | 47 | 113 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 3.46E-10 | 55 | 114 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 146 aa Download sequence Send to blast |
MTKLDPEIKS DXXXXXXXXX XXXXXXXXXX XXEFLNEPAV LNESGEFKQK ITSFDQDGKE 60 WTFRLSIRKN EIYSKPTFTP ASWRPFVKYF GLRDGDGVIF YIEKDDGARK IQIRGLRKIN 120 CMLLGNRPWA EVKKVENQAS TSHYKA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021649266.1 | 1e-27 | uncharacterized protein LOC110641745 | ||||
| TrEMBL | A0A067L2T4 | 1e-82 | A0A067L2T4_JATCU; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF15290 | 3 | 12 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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