PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U38620.30

Common Name

JCGZ_10783, LOC105639484

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GeBP

Protein Properties

Length: 242aa MW: 27699.9 Da PI: 6.1591

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U38620.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	49.6	1.1e-15	69	158	4	96
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf..kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 ++ ws+ De++lL G+i+f+ k s+++d++ +++k + +l++Ki+ LK+K+ k+ k g + s++ eh+ k f+ s+kiW Jcr4U38620.30 69 SQTWSKMDELILLEGMIEFNIKST--DSNNVDRLLDYMKTHXXXxxXXXXXELIDKIKGLKQKYVKNLGK---GLKASLTDEHEIKLFDKSSKIW 158 678**************66655..5689999999999877651156789***************...******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.0E-13	70	158	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSTSTARYVT DSQSDQSEEN IQKYTRNKRE AQEDMTASSK PKKKPTKNPD ADDADCVFEL 60 TIKKPKQWSQ TWSKMDELIL LEGMIEFNIK STDSNNVDRL LDYMKTHXXX XXXXXXXELI 120 DKIKGLKQKY VKNLGKGLKA SLTDEHEIKL FDKSSKIWVL ASTCAATIKE KIPKLGVCPR 180 CSTEMEDEES PEFALWCSYT HPQLYSNLRH SEIADMAALY SRVFLAQVEA EGELEQLRGG 240 RT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078977.1	1e-163	probable transcription factor At4g00610
TrEMBL	A0A067LF00	1e-161	A0A067LF00_JATCU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-09	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	105639484

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]