PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U38869.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WOX
Protein Properties Length: 201aa    MW: 23009.8 Da    PI: 9.5591
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U38869.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093774237
                   T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC CS
       Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl 37
                   r+R+t+t++q+++L+el+ +   r p+a+++ee++++l
  Jcr4U38869.10 37 RRRWTPTPDQIRILKELYDNrgVRSPNADQIEEISARL 74
                   89*****************7789*************98 PP
2Wus_type_Homeobox57.43.4e-193679244
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGk 44
                       +r RWtPtp+Qi+iL+ely+ +G+r+Pn+++i++i+a+L++yGk
      Jcr4U38869.10 36 TRRRWTPTPDQIRILKELYDnRGVRSPNADQIEEISARLRQYGK 79
                       689****************979*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.97E-53075IPR009057Homeodomain-like
PfamPF000463.7E-73774IPR001356Homeobox domain
CDDcd000860.008723774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGSNQQQVQQ QQHHQLANEE NSGVGSAKGS FLCRKTRRRW TPTPDQIRIL KELYDNRGVR  60
SPNADQIEEI SARLRQYGKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP MQQQQQQQQQ  120
QQQQQQQQST ASATVKPDQD LSFYNKYPSF TSPGFSSSAS PSSNSGFTVG QMGNYGYGYV  180
TMEKSFRVSN DDQERVYGFV S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065769.18e-69protein WUSCHEL
TrEMBLA0A067LEE52e-67A0A067LEE5_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-18WOX family protein