PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

KDD71320.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales

Family

Protein Properties

Length: 74aa MW: 8510.64 Da PI: 7.4089

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KDD71320.1	genome	UBC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	26	45	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f++ G C +G C+F+H+ KDD71320.1 26 CFDFLK-GLCTRGLLCRFSHD 45 778999.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.662	1	13	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	20	47	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0028	21	46	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	22	50	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-4	25	52	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MRGDHCRYSH SVEYIISVNS QEKGICFDFL KGLCTRGLLC RFSHDLSNLQ APEVQESADG 60 RHRFAPICYD FVKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011402353.1	1e-36	Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A059LB21	1e-48	A0A059LB21_9CHLO; Uncharacterized protein (Fragment)
STRING	A0A087SU96	5e-36	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3507	13	14