PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD72319.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family MYB_related
Protein Properties Length: 163aa    MW: 17656.1 Da    PI: 7.5184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD72319.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07102146345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwq 45 
                      +WT  Ed  l++a k+ +++   +W+++ar +g kg  +  c  r+ 
       KDD72319.1 102 PWTDAEDRALIHALKEVPKDdaeRWDKVARAVGaKGAAG--CAARFK 146
                      8********************************777655..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.204140IPR017877Myb-like domain
SMARTSM007170.0066254IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-6548IPR009057Homeodomain-like
PfamPF002491.4E-5541IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-4544IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-595155IPR009057Homeodomain-like
PROSITE profilePS500907.13195149IPR017877Myb-like domain
SMARTSM007172.5E-599151IPR001005SANT/Myb domain
PfamPF002494.4E-6102148IPR001005SANT/Myb domain
SuperFamilySSF466894.71E-8102149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
EELEAWDEEE VRLLRKALAK FPPGTARRWE VVQTLVPTRT VPEILSMVKH GLASAKYSGG  60
VAGDTYVVPK KRAANTVIQS AADQREAAFS DVVVQAEVEV EPWTDAEDRA LIHALKEVPK  120
DDAERWDKVA RAVGAKGAAG CAARFKELKA ALKKAAAAEA APR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400967.18e-30DnaJ-like protein subfamily C member 2
TrEMBLA0A059LE671e-110A0A059LE67_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SQF63e-29(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.13e-13DnaJ domain ;Myb-like DNA-binding domain