PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD72353.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family MYB
Protein Properties Length: 250aa    MW: 28687.6 Da    PI: 9.9201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD72353.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13852348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      W   Ede+l+ av ++G ++W++I++ +  ++++kqck rw+ +l
       KDD72353.1  8 IWKNTEDEILKAAVMKYGLNQWSRISSLLV-RKSAKQCKARWYEWL 52
                     5999**************************.************986 PP
2Myb_DNA-binding34.16.5e-1159101247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+  +
       KDD72353.1  59 TEWTREEDEKLLHLAKLMPTQ-WRTIAPVVG--RTPTQCLERYERL 101
                      68*****************99.********8..*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.206156IPR017930Myb domain
SMARTSM007178.7E-14554IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-19860IPR009057Homeodomain-like
CDDcd001671.32E-11952No hitNo description
PfamPF139218.4E-14969No hitNo description
SuperFamilySSF466897.19E-2132104IPR009057Homeodomain-like
CDDcd116591.34E-3054106No hitNo description
PROSITE profilePS5129415.91157106IPR017930Myb domain
SMARTSM007171.7E-1257104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-1461103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MFLIKGGIWK NTEDEILKAA VMKYGLNQWS RISSLLVRKS AKQCKARWYE WLDPAIKKTE  60
WTREEDEKLL HLAKLMPTQW RTIAPVVGRT PTQCLERYER LLDAATGEDG GAGSSRDDPR  120
RLRPGEIDPN PESKPARPDP IDMDEDEKEM LSEARARLAN TKGKKAKRKA RERALDEARR  180
LATLQKKREL KAAGIETRDR GPRRGAIDYG TEVPFERRPA AGFHDVEEER ERAQSLRAEF  240
RPATVEQLEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-11522504249Cell division cycle 5-like protein
5xjc_L1e-11522504249Cell division cycle 5-like protein
5yzg_L1e-11522504249Cell division cycle 5-like protein
5z56_L1e-11522504249Cell division cycle 5-like protein
5z57_L1e-11522504249Cell division cycle 5-like protein
5z58_L1e-11522504249Cell division cycle 5-like protein
6ff4_L1e-11522504249Cell division cycle 5-like protein
6ff7_L1e-11522504249Cell division cycle 5-like protein
6icz_L1e-11522504249Cell division cycle 5-like protein
6id0_L1e-11522504249Cell division cycle 5-like protein
6id1_L1e-11522504249Cell division cycle 5-like protein
6qdv_O1e-11522504249Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005648666.11e-136hypothetical protein COCSUDRAFT_65754
SwissprotP929481e-122CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A059LDG01e-179A0A059LDG0_9CHLO; Uncharacterized protein (Fragment)
STRINGXP_005648666.11e-135(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-117cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]