PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD72953.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family MYB_related
Protein Properties Length: 104aa    MW: 11812.4 Da    PI: 11.3931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD72953.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.28.9e-144085247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++W++ E+ +++++ + lG+g+Wk I+++   +Rt+ q+ s+ qk+
       KDD72953.1 40 DPWSETEHTQFLHGLRALGKGQWKQISKYYVPTRTATQVASHAQKH 85
                     58***************************999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0513490IPR017930Myb domain
SuperFamilySSF466894.02E-163590IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-143788IPR006447Myb domain, plants
SMARTSM007172.4E-93888IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-113885IPR009057Homeodomain-like
PfamPF002491.3E-114185IPR001005SANT/Myb domain
CDDcd001673.27E-94186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSGAPSPFQL PPRLALVDEM QRTKEQTEAT GSRRSTKKGD PWSETEHTQF LHGLRALGKG  60
QWKQISKYYV PTRTATQVAS HAQKHFLRVS GATKRRSRFT AMEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397494.12e-39Transcription factor MYB1R1
SwissprotB8BI934e-20MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC514e-20MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A059LF472e-70A0A059LF47_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SFV29e-39(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-22MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]