PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73307.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family B3
Protein Properties Length: 118aa    MW: 13242.1 Da    PI: 9.8465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73307.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.5e-137107198
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                 f+k+lt+sd++  gr+v+pk +ae+h     g+ ++++ l + d+ g++ +++++y  ++ s++y+l+   +  v+   +  gD+++F    r +++ +
  KDD73307.1   7 FEKTLTSSDANGAGRIVIPKGHAESHfptlPGDDQKGIVLPMFDTFGKRHNFRFRYwiNNASRMYLLE-DAQAVVDKYSMGHGDVLIFG---RlQDGMY 101
                 99****************************55567899*********999999999767777777777.99*****************9...4456666 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                  v+ +r
  KDD73307.1 102 AVTGRR 107
                 666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-186108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-156100No hitNo description
Gene3DG3DSA:2.40.330.104.7E-226110IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-57109IPR003340B3 DNA binding domain
PfamPF023622.1E-97103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGARVLFEKT LTSSDANGAG RIVIPKGHAE SHFPTLPGDD QKGIVLPMFD TFGKRHNFRF  60
RYWINNASRM YLLEDAQAVV DKYSMGHGDV LIFGRLQDGM YAVTGRRGSK ADLNRHVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-23610722121B3 domain-containing transcription repressor VAL1
5yzz_C2e-23610722121B3 domain-containing transcription repressor VAL1
5z00_C2e-23610722121B3 domain-containing transcription repressor VAL1
5z00_G2e-23610722121B3 domain-containing transcription repressor VAL1
5z00_K2e-23610722121B3 domain-containing transcription repressor VAL1
5z00_M2e-23610722121B3 domain-containing transcription repressor VAL1
6fas_A2e-2361078107B3 domain-containing transcription repressor VAL1
6fas_B2e-2361078107B3 domain-containing transcription repressor VAL1
6j9a_A3e-23610723122B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398770.11e-43B3 domain-containing transcription repressor VAL2
TrEMBLA0A059LG409e-83A0A059LG40_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SJH04e-43(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.15e-23high-level expression of sugar-inducible gene 2