PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73390.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family B3
Protein Properties Length: 121aa    MW: 13894.8 Da    PI: 10.8678
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73390.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.2e-1130933596
                EEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3 35 tltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 lt+ de  + W v++    + ++++y lt+GW+   + +++  gD++v+++  r++f  ++++
  KDD73390.1 30 RLTVVDEADKAWPVQYEGfmSSGQRHYRLTSGWSTLMRTQRVGIGDTLVLERWTRDRFVIHLRI 93
                58999***********6643555555*************************6544888666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.277197IPR003340B3 DNA binding domain
CDDcd100172.32E-72192No hitNo description
SuperFamilySSF1019361.2E-82894IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-82996IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-83091IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAQLLFPQAD EQARRDDPAG MNFNSLFKHR LTVVDEADKA WPVQYEGFMS SGQRHYRLTS  60
GWSTLMRTQR VGIGDTLVLE RWTRDRFVIH LRIVARPRPQ PLPPPSRASS GRLEASRGEG  120
Y
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005842997.12e-28hypothetical protein CHLNCDRAFT_141717
TrEMBLA0A059LGZ16e-84A0A059LGZ1_9CHLO; Uncharacterized protein
STRINGXP_005842997.19e-28(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP815022