PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73524.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family B3
Protein Properties Length: 163aa    MW: 17897.7 Da    PI: 9.5659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73524.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.16e-179901598
                -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 +v+p++f++++   ++ e++   ++ d +g sW+++li r+++++  y+l+ GW++F ++ g++egD+vvF++++  ++++++ +++
  KDD73524.1  9 KFVVPNEFVSKFmqHLV-EQP--FKMVDGQGGSWDMTLIQRRNKEKyeYMLQ-GWRRFGEEMGVQEGDTVVFEMVN--SQNMLLNIVQ 90
                689******99974333.465..8888***********99888888889999.********************765..4556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.407192IPR003340B3 DNA binding domain
SMARTSM010193.9E-9292IPR003340B3 DNA binding domain
CDDcd100172.90E-13781No hitNo description
Gene3DG3DSA:2.40.330.101.0E-12892IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-13891IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-14989IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MCLIAPKFKF VVPNEFVSKF MQHLVEQPFK MVDGQGGSWD MTLIQRRNKE KYEYMLQGWR  60
RFGEEMGVQE GDTVVFEMVN SQNMLLNIVQ RSTGGKGGKL LRGKHPMGLL MSEHGHPPPM  120
GLNPDLVALM HQHQQGLGPG SYGVRSAGGG GVPPHPSGGL AGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059LHM61e-115A0A059LHM6_9CHLO; Uncharacterized protein (Fragment)