PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73540.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family AP2
Protein Properties Length: 160aa    MW: 17374.7 Da    PI: 10.5312
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73540.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-153389156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkklege 56
                s y GV+++k++gr++A+I+ + e +g k  + +lg++ tae+Aa+ +++a+++l+g+
  KDD73540.1 33 SPYIGVTQYKRTGRYEAHIWIV-EmRGaKGHQRHLGSYATAEDAARCYDRAALRLRGP 89
                6799*****************5.6699999999***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-143397IPR016177DNA-binding domain
PROSITE profilePS5103215.0273496IPR001471AP2/ERF domain
SMARTSM003801.5E-2234102IPR001471AP2/ERF domain
CDDcd000187.57E-153596No hitNo description
PfamPF008474.4E-83588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-153597IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEVPACTDVG ALGVSGAVAP VKRRRSGPKS KSSPYIGVTQ YKRTGRYEAH IWIVEMRGAK  60
GHQRHLGSYA TAEDAARCYD RAALRLRGPG AELNFPLEDY SEDPFLIAHS KVDKFRFLDL  120
LRAEFAIQSD RPSSFAARAR AGASPSSRRG STPAARGLPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400550.16e-56AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A059LHE71e-112A0A059LHE7_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SPB32e-55(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP575168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.16e-17AP2 family protein