PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

KDD73596.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales

Family

Protein Properties

Length: 82aa MW: 9366.77 Da PI: 4.6818

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KDD73596.1	genome	UBC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.4	4.4e-09	40	71	20	51
HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyeyss 51 +l A+ELS C+ +va i+f ++g+l yss KDD73596.1 40 VLRRAFELSSICNCQVAFIMFTPQGELVQYSS 71 7899**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.451	13	73	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-11	29	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-6	40	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MKPCDVIRVA SQMALDKQNV DFDAEAGIRE MAYQHCTQHV LRRAFELSSI CNCQVAFIMF 60 TPQGELVQYS SAPMDEMLEK YS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A059LHD9	5e-55	A0A059LHD9_9CHLO; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3656	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-10	AGAMOUS-like 20