PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73610.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family AP2
Protein Properties Length: 249aa    MW: 27585.8 Da    PI: 10.2852
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73610.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.32.1e-0959107253
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                  ykGV+ + +++r +A+I++      +  ++++lg fgta eAa a +  +++l
  KDD73610.1  59 EYKGVTHHVRTKRHEAHIWEG-----QpgRQIYLGGFGTATEAALAFDILALRL 107
                 59******************4.....456*****************99999887 PP
2AP238.43.1e-12150200155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s ++GV+++  +grW+++I       g r++ +lg ++t+ eAa+a+++a+ + +g
  KDD73610.1 150 SFFRGVTRHA-KGRWESRIGQaS---G-RRYLYLGLHDTEVEAAQAYDRAAIAQRG 200
                 579****998.7******88833...3.6**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.29659117IPR001471AP2/ERF domain
SMARTSM003801.2E-959121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-859115IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-960115IPR016177DNA-binding domain
SuperFamilySSF541713.73E-14150209IPR016177DNA-binding domain
SMARTSM003802.9E-21151214IPR001471AP2/ERF domain
PROSITE profilePS5103214.091151208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-15152208IPR001471AP2/ERF domain
PRINTSPR003671.2E-5152163IPR001471AP2/ERF domain
PfamPF008477.4E-8152200IPR001471AP2/ERF domain
CDDcd000181.92E-19152207No hitNo description
PRINTSPR003671.2E-5190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MRASHSSRSS RRESSPAMVL TRKRSRGRES SVGCYGDGAG ESPDEVRAVR RATPNPTTEY  60
KGVTHHVRTK RHEAHIWEGQ PGRQIYLGGF GTATEAALAF DILALRLGRR ETNFHASHYA  120
PYLESLMAHA PHELVAGLRR QSKGSAQQSS FFRGVTRHAK GRWESRIGQA SGRRYLYLGL  180
HDTEVEAAQA YDRAAIAQRG LEAQTNFHIA EYLAELAPDL QRKARARGML DDLPALPAPT  240
RSSEEAETA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395646.14e-89Floral homeotic protein APETALA 2
TrEMBLA0A059LHN01e-180A0A059LHN0_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SAM72e-88(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.15e-33AP2 family protein