PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73703.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family LSD
Protein Properties Length: 66aa    MW: 6939.02 Da    PI: 7.3471
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73703.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD124.54.6e-08119725
     zf-LSD1  7 lLsYPrGApsVRCalCdtV 25
                +L Y +GA +V+CalC +V
  KDD73703.1  1 MLEYAFGANAVKCALCRHV 19
                699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.8E-5120IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-5219IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MLEYAFGANA VKCALCRHVT PVTARGARPD AAQGAQPVLA AVLVHNPPTL DEQGREVECL  60
ALGIRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059LHC73e-40A0A059LHC7_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.84e-06LSD family protein