PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73886.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family NF-YB
Protein Properties Length: 66aa    MW: 7348.31 Da    PI: 5.631
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73886.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB83.42.8e-261361250
       NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtsea 50
                r qd+flPian+srimkk lP+n+ki+kdaket+qecvsefisf+tse 
  KDD73886.1 13 RRQDHFLPIANISRIMKKYLPGNSKIAKDAKETMQECVSEFISFITSEC 61
                789********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-24960IPR009072Histone-fold
SuperFamilySSF471131.79E-191064IPR009072Histone-fold
PfamPF008081.5E-171861IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MGDDCGDEGQ NGRRQDHFLP IANISRIMKK YLPGNSKIAK DAKETMQECV SEFISFITSE  60
CVIHGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-201360249Transcription factor HapC (Eurofung)
4g92_B4e-201360249Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396982.15e-26Nuclear transcription factor Y subunit B-3
SwissprotQ67XJ29e-23NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
SwissprotQ9SLG05e-23NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A059LI723e-42A0A059LI72_9CHLO; Uncharacterized protein
STRINGA0A087SEE22e-25(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20231616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.61e-25nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]