PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD74225.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family C2H2
Protein Properties Length: 120aa    MW: 12461 Da    PI: 10.0067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD74225.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-063961223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                +Cp+C+k++++   L+ H+++ H
  KDD74225.1 39 QCPHCDKVYKQAGRLQDHLKRqH 61
                8*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00633861IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5333866IPR007087Zinc finger, C2H2
PROSITE patternPS0002804061IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MGGIKNRDAK RTQAKVFSSG GGGGTKGPAV VDKRGTEMQC PHCDKVYKQA GRLQDHLKRQ  60
HAQEEENPQA DGSRPASKPA AVDLAVPKPA AVDPAVSKPA AVDPAHSKPC VPAPTPSHPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013902590.13e-19Putative ATP-dependent RNA helicase DHX57
TrEMBLA0A059LJE22e-80A0A059LJE2_9CHLO; Uncharacterized protein (Fragment)
STRINGXP_005844949.17e-17(Chlorella variabilis)