PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD74655.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family C3H
Protein Properties Length: 229aa    MW: 25282.8 Da    PI: 8.4308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD74655.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.3e-09133157126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y  ++C+++++ G Ck+Gd C+F+Hg
  KDD74655.1 133 YQGVPCPDYRK-GLCKRGDLCPFSHG 157
                 56689******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.209.1E-6963IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.89E-61667IPR020683Ankyrin repeat-containing domain
CDDcd002043.53E-51866No hitNo description
PROSITE profilePS500889.8851853IPR002110Ankyrin repeat
PROSITE profilePS5029710.7361858IPR020683Ankyrin repeat-containing domain
PfamPF000235.7E-41852IPR002110Ankyrin repeat
SuperFamilySSF902292.49E-5131160IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671132159IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-7135157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5163196IPR000571Zinc finger, CCCH-type
SMARTSM003562167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLCAASRAAG VNTASPTDGL TALHGACSRP NRGLSRVIAL LIGAGADKHA LDAFGRTPTA  60
LLTAAASPAS VQDDEVAATS ELARDCYRTD KFRMFQFKIE TCPRLEEMHS WTLCPYMHPG  120
EKARRRDPRL YRYQGVPCPD YRKGLCKRGD LCPFSHGVFE SWLHPSKYRT QLCQEGQACR  180
RTICFFAHSV PELREPTHCF DADEEAAAAA LRRPRVRPSA KAKGEAEDG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399204.12e-74Zinc finger CCCH domain-containing protein 33
SwissprotQ10EL16e-46C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A059LKN61e-168A0A059LKN6_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SKQ49e-74(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.29e-47C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]