PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD74730.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family MYB_related
Protein Properties Length: 113aa    MW: 12303.3 Da    PI: 11.5496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD74730.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-092375247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47
                     ++WT+ E   lvd+v +lG g+W+ + r  g         +R++ ++k++w+++
       KDD74730.1 23 NPWTAAETRALVDGVLMLGAGRWAEVKRL-GtpsvaaalAHRSPVDLKDKWRNL 75
                     69*******************99997655.4488999999************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-111777IPR009057Homeodomain-like
PROSITE profilePS5129411.4051780IPR017930Myb domain
SuperFamilySSF466892.23E-132078IPR009057Homeodomain-like
SMARTSM007176.7E-62178IPR001005SANT/Myb domain
PfamPF002494.6E-72375IPR001005SANT/Myb domain
CDDcd116601.69E-152477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
ASLRAARSAP ASGVEERAKK KHNPWTAAET RALVDGVLML GAGRWAEVKR LGTPSVAAAL  60
AHRSPVDLKD KWRNLVRVAR LPSQALKTRL SKSGDVPLEL IMEVRTIMAS QQE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649999.15e-24hypothetical protein COCSUDRAFT_61672
RefseqXP_011401770.13e-25hypothetical protein F751_3555
TrEMBLA0A059LKU32e-73A0A059LKU3_9CHLO; Uncharacterized protein (Fragment)
STRINGXP_005649999.12e-23(Coccomyxa subellipsoidea)
STRINGA0A087SSM11e-24(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-15TRF-like 6