PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD75135.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family MYB_related
Protein Properties Length: 185aa    MW: 20030.6 Da    PI: 10.7995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD75135.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-142565345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +W+ eEd +l +a+++lG++ W+ I++ +g  Rt++ +k+rw+
       KDD75135.1 25 SWSGEEDVRLMEAHARLGNR-WTEISKIFG-DRTDNAVKNRWH 65
                     7*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.69E-22172IPR009057Homeodomain-like
PROSITE profilePS500904.693117IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-19265IPR009057Homeodomain-like
PROSITE profilePS5129419.7351872IPR017930Myb domain
SMARTSM007171.1E-122270IPR001005SANT/Myb domain
PfamPF002491.8E-132465IPR001005SANT/Myb domain
CDDcd001673.46E-102568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MRTKTSKQCR RRWKNFLTIN AKTCSWSGEE DVRLMEAHAR LGNRWTEISK IFGDRTDNAV  60
KNRWHALVRK HPDLERPPGG HPGGGGVSGG QPSPYANGEL APAHAYGGAM RQHSPLGMAG  120
TAAELGSPVL RGTKRSLESS PLDGPRGPTR GPGPAAPHHP PASAPLSIRV SRDFLTPWEL  180
ELADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1717337109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399211.12e-44Myb-related protein B
TrEMBLA0A059LM151e-132A0A059LM15_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SKR18e-44(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.27e-19MYB family protein