PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD75526.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family CAMTA
Protein Properties Length: 151aa    MW: 17451.9 Da    PI: 8.3277
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD75526.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1130.46.8e-41301453115
        CG-1   3 kekkrwlkneeiaaiLe...nfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                 k k  wlkn ei +iL+   + +  +l+ e++ +p+ g l+L +rk  r+fr+DG++w+kkkdg++v+E+hekLKv   e l+cyYahs+ +  +qrr+
  KDD75526.1  30 KAKDSWLKNAEIFRILTclwDGAVVDLAREAPVQPEGGLLFLVDRKSCRNFRRDGHHWRKKKDGRAVKETHEKLKVADEERLNCYYAHSDLEDALQRRS 128
                 45899***********9654455666777********************************************************************** PP

        CG-1  99 ywlLeeelekivlvhyl 115
                 ywlL+e++++ vl+hyl
  KDD75526.1 129 YWLLDEQRDSAVLMHYL 145
                 ****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143747.08424151IPR005559CG-1 DNA-binding domain
SMARTSM010769.2E-4027148IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-3931145IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MARARSGGGP LPLQESDPSL PEDVRALISK AKDSWLKNAE IFRILTCLWD GAVVDLAREA  60
PVQPEGGLLF LVDRKSCRNF RRDGHHWRKK KDGRAVKETH EKLKVADEER LNCYYAHSDL  120
EDALQRRSYW LLDEQRDSAV LMHYLCSYVT R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850100.16e-45hypothetical protein CHLNCDRAFT_142166
RefseqXP_011401233.16e-45Triacylglycerol lipase SDP1
TrEMBLA0A059LMW71e-107A0A059LMW7_9CHLO; CG-1 domain-containing protein (Fragment)
STRINGA0A087SR662e-44(Auxenochlorella protothecoides)
STRINGXP_005850100.12e-44(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP513289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.13e-34ethylene induced calmodulin binding protein