PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

KDD76032.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales

Family

Protein Properties

Length: 229aa MW: 24422.4 Da PI: 4.8237

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KDD76032.1	genome	UBC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	26.7	1.2e-08	88	154	19	85
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 + lP++ +kki+ d++v+++s+e +s +f+ l+ ++ a +kr+tl+ +d+ +a r KDD76032.1 88 TMLPISLVKKIMLLDPEVSRVSSEGLSAVSLVTTIFLGVLAEQAQQVATGAKRKTLRFADVRDASRR 154 679**********************************************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00398	1.1E-4	1	75	IPR009071	High mobility group box domain
PROSITE profile	PS50118	10.771	1	61	IPR009071	High mobility group box domain
Pfam	PF00505	5.2E-8	3	65	IPR009071	High mobility group box domain
CDD	cd01390	2.10E-12	3	61	No hit	No description
Gene3D	G3DSA:1.10.30.10	2.8E-10	3	62	IPR009071	High mobility group box domain
SuperFamily	SSF47095	1.01E-9	4	63	IPR009071	High mobility group box domain
SuperFamily	SSF47113	4.53E-12	82	151	IPR009072	Histone-fold
Pfam	PF00808	6.4E-9	89	150	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.2E-11	90	154	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGRGPTAYFL FADHVREAVQ AEVRAANEGK ASVALVGKAI GERWKALTDD ERLKYKTSAA 60 EMAKSAAETN AETDNAEENP STSSSGPTML PISLVKKIML LDPEVSRVSS EGLSAVSLVT 120 TIFLGVLAEQ AQQVATGAKR KTLRFADVRD ASRRYSRQCD MGLYEGLVHL EKKITENQEE 180 EADEVAPAKK TTAAGAADPK GVATLRAFFA PVEGSENLAS AEENAATTD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011400744.1	4e-29	Tryptophan-tRNA ligase
TrEMBL	A0A059LNT8	1e-165	A0A059LNT8_9CHLO; Uncharacterized protein
STRING	A0A087SPV3	2e-28	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4674	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	4e-11	nuclear factor Y, subunit C13