PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK21907.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 307aa    MW: 34281.4 Da    PI: 9.6847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK21907.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-18111204198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k ++++d lks+rl++p +f++ehg++k++  ++tl  ++g +   ++  + + gr+ l++GW++F+kan Lk  D+++ +l + +++++v+++++
  KFK21907.1 111 FVKLTLTEDCLKSSRLYIPLTFMREHGLNKPG--MITLLGKNGMKTAANV-REESMGRVSLGRGWNDFAKANALKIDDTFMMELFW-DNGTPVLSLLS 204
                 89999************************766..8***************.3566666**************************99.67778888776 PP
2B3474.6e-15213306197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 f++ +++ d+ +++r+ lp +f++++g++k++  ++tl +++g +   kl    + gr+ l++G keFv  ngL  g++++F+l++ ++++++++++
  KFK21907.1 213 FVTLTLTDDNVRKSRVHLPMPFVRANGLVKPG--MMTLISKDGTRSLAKLLRVSSTGRMSLGRGFKEFVIGNGLIIGESFTFELVW-ENETPMLSLC 306
                 67778899*********************776..89999***********87888888****************************.6777888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-44096IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-19102208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20107207IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-15110199No hitNo description
PfamPF023621.1E-16111204IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296111206IPR003340B3 DNA binding domain
SMARTSM010193.4E-24111206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-14209306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-18211306IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-14213306IPR003340B3 DNA binding domain
CDDcd100177.09E-16213307No hitNo description
PROSITE profilePS5086310.926213307IPR003340B3 DNA binding domain
SMARTSM010191.3E-18213307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MFYAGYLSNE ENGGDDKDNT ELARKKKARM TNLQTKVGPS SSGISCFVAF VTASNLNSDS  60
LYLPIDFTSS DAIKRKYGKI VLTDGRETSW EMDLNIFYEN EKSRVRGQNR FVKLTLTEDC  120
LKSSRLYIPL TFMREHGLNK PGMITLLGKN GMKTAANVRE ESMGRVSLGR GWNDFAKANA  180
LKIDDTFMME LFWDNGTPVL SLLSSESKSH TGFVTLTLTD DNVRKSRVHL PMPFVRANGL  240
VKPGMMTLIS KDGTRSLAKL LRVSSTGRMS LGRGFKEFVI GNGLIIGESF TFELVWENET  300
PMLSLCN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK21907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405015.21e-98B3 domain-containing protein REM12
TrEMBLA0A087FWA50.0A0A087FWA5_ARAAL; Uncharacterized protein
STRINGA0A087FWA50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24696.16e-56B3 family protein