PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22184.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 370aa    MW: 42290.8 Da    PI: 7.9137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22184.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00112042123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++Cg s s k++ ++Hi +H
  KFK22184.1 20 YLCQYCGISRSKKYLITSHILSH 42
                56*******************96 PP
2zf-C2H218.74.7e-066688123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ Cg  F+ + +Lk+H+ +H
  KFK22184.1 66 HNCQECGAEFKKPAHLKQHMLSH 88
                67*******************99 PP
3zf-C2H215.54.8e-0594118123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C   dC  s++rk++L+rH+ tH
  KFK22184.1  94 FTCYvdDCAASYRRKDHLNRHLLTH 118
                 789999*****************99 PP
4zf-C2H217.31.4e-05172196123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   C k F+ +s+L++H  +H
  KFK22184.1 172 HVCQevGCRKAFRYPSQLQKHRDSH 196
                 789999***************9998 PP
5zf-C2H219.42.9e-06262287123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kC+   C+ +Fs +snL++H +  H
  KFK22184.1 262 FKCEveGCSSTFSKPSNLQKHVKAvH 287
                 89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355252042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-46685IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.3396693IPR007087Zinc finger, C2H2
SMARTSM003550.00696688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576679.3E-1175127No hitNo description
Gene3DG3DSA:3.30.160.606.1E-1386120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.9194123IPR007087Zinc finger, C2H2
SMARTSM003550.1194118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SMARTSM003550.3123148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891123153IPR007087Zinc finger, C2H2
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-7166196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.66E-6168196No hitNo description
SMARTSM003550.02172196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743172201IPR007087Zinc finger, C2H2
PROSITE patternPS000280174196IPR007087Zinc finger, C2H2
SMARTSM003554.8204229IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-4206227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
SMARTSM0035525232253IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.41E-9243300No hitNo description
SMARTSM003554.2E-4262287IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-8262287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.715262292IPR007087Zinc finger, C2H2
PROSITE patternPS000280264287IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4288314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.3293319IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGEEANIDMD ASMIKDIRKY LCQYCGISRS KKYLITSHIL SHHKMEMEEE RDDEGCEVEE  60
EALGKHNCQE CGAEFKKPAH LKQHMLSHSI ERPFTCYVDD CAASYRRKDH LNRHLLTHKG  120
KLFKCPMENC KSEFSVQGNV GRHVKEMHQN VDSSKDDTGN GDTEGSAGQK PHVCQEVGCR  180
KAFRYPSQLQ KHRDSHVKLD SVEAFCSEPG CMKYFTNDEC LKAHIRSCHQ HVNCEICGSK  240
HLKKNIKRHL RTHDEESTPG VFKCEVEGCS STFSKPSNLQ KHVKAVHEDI RPFICGFPGC  300
GMRFAYKHVR NNHENSGSHV YTCGDFVETD GNFTSRPRGG VKRKQVTAEM LIRKRVMPPQ  360
FDSAEEHKTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D2e-15203229284Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415924.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A087FX320.0A0A087FX32_ARAAL; Uncharacterized protein
STRINGA0A087FX310.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA