PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22195.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 179aa    MW: 21143 Da    PI: 9.8163
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22195.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57389.83.2e-2819113397
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 ++r w+++De+++L+G++d++++++ s+++d+dafy+++k+ i++ + k+ql+ K+r+LKk+f +   ++++ + p f+++ ++ +f+ls +iW 
  KFK22195.1  19 SERNWNQSDELLILKGIVDYEHEKKLSYKSDWDAFYRYIKDFIDASFMKKQLIGKVRKLKKRFIDYPVRSNDARGPPFANSGEDRVFNLSFIIWA 113
                 689******************************************************************9************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.8E-2220112IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MWAILKRRNL PKKTTFEPSE RNWNQSDELL ILKGIVDYEH EKKLSYKSDW DAFYRYIKDF  60
IDASFMKKQL IGKVRKLKKR FIDYPVRSND ARGPPFANSG EDRVFNLSFI IWATKKETKS  120
QCGSNEILDQ VKDLPNVEHE SVRSNSMKID NGDKEESEEV CSALRRYSFS KSRWKSTET
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22195.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484336.15e-45PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X5
RefseqXP_018484337.15e-45PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X6
RefseqXP_018484338.16e-45PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X7
TrEMBLA0A087FX431e-129A0A087FX43_ARAAL; Uncharacterized protein
STRINGA0A087FX431e-130(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-35DNA-binding storekeeper protein-related transcriptional regulator