PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22266.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 182aa    MW: 20157.4 Da    PI: 7.1837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22266.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.2e-184291255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  KFK22266.1 42 NYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 91
                69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.32E-3441101No hitNo description
PfamPF008471.7E-124191IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2242100IPR016177DNA-binding domain
PROSITE profilePS5103222.9854299IPR001471AP2/ERF domain
SMARTSM003802.5E-3942105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3242100IPR001471AP2/ERF domain
PRINTSPR003671.5E-104354IPR001471AP2/ERF domain
PRINTSPR003671.5E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MQDSSSSPPG SQRNLRSPAT ERTTVKGSKN VQNLKGVSKH PNYRGVRMRQ WGKWVSEIRE  60
PRKKSRIWLG TFSTPEMAAR AHDVAALAIK GGSAHLNFPD LAYHLPRPAS ADPKDIQAAA  120
TAAAVDWKEP PESPSSTVTS SPVADDAFTD LPDLLLDVND HHKLDGFWDS FPYEEPFFSE  180
NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-173299372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615441e-142AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY5608741e-142AY560874.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds.
GenBankBT0115761e-142BT011576.1 Arabidopsis thaliana At4g16750 mRNA, complete cds.
GenBankBT0205921e-142BT020592.1 Arabidopsis thaliana At4g16750 gene, complete cds.
GenBankCP0026871e-142CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973411e-142Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414307.17e-98ethylene-responsive transcription factor ERF039
SwissprotQ9SUK85e-91ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A087FXB41e-131A0A087FXB4_ARAAL; Uncharacterized protein
STRINGA0A087FXB41e-132(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.11e-89ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]