PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22641.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 196aa    MW: 22753.2 Da    PI: 8.6822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22641.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.41.5e-41201482128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkge 98 
                  pG++F+Ptd el+++yLk+k++g + ++ e+i+++d+y++ePwdLp k++ ++++ew+fF++  kky+ +g  k+rat+ g Wk t k+++v+s  ++
  KFK22641.1  20 FPGYKFSPTDVELISYYLKNKMDGLEKSV-EIIPDADVYNIEPWDLPdKSIVKSDTEWFFFCTLGKKYPpRGALKRRATEMGNWKVTSKERDVKS-YSQ 116
                 69************************999.99***************778888999************956888999******************.999 PP

         NAM  99 lvglkktLvfy..kgrapkgektdWvmheyrl 128
                 ++g+k+tLvf+  +gr pkg++t+W++hey +
  KFK22641.1 117 VIGIKRTLVFHigHGRPPKGKRTEWIIHEYCM 148
                 ***********8888***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4512161IPR003441NAC domain
PROSITE profilePS5100543.219162IPR003441NAC domain
PfamPF023652.2E-2121147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEAVGVCKDT TKLVEVPTVF PGYKFSPTDV ELISYYLKNK MDGLEKSVEI IPDADVYNIE  60
PWDLPDKSIV KSDTEWFFFC TLGKKYPPRG ALKRRATEMG NWKVTSKERD VKSYSQVIGI  120
KRTLVFHIGH GRPPKGKRTE WIIHEYCMKE DDDLVLCRLR RNKELYKSEA TRAKVSGREA  180
EWCNEFREHV QLGKDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-3181647167NO APICAL MERISTEM PROTEIN
1ut4_B4e-3181647167NO APICAL MERISTEM PROTEIN
1ut7_A4e-3181647167NO APICAL MERISTEM PROTEIN
1ut7_B4e-3181647167NO APICAL MERISTEM PROTEIN
4dul_A4e-3181647167NAC domain-containing protein 19
4dul_B4e-3181647167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302791.17e-85NAC domain-containing protein 89-like
RefseqXP_009126534.17e-85PREDICTED: NAC domain-containing protein 89-like
SwissprotQ94F582e-82NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A087FYD91e-143A0A087FYD9_ARAAL; Uncharacterized protein
STRINGA0A087FYD91e-144(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104532533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.18e-85NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]