PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22685.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 444aa    MW: 49562.4 Da    PI: 4.5625
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22685.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.8e-37341252102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++sws ++nsf+v+d+ ef++++LpkyFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+k+ll++i 
    KFK22685.1  34 FLSKTYDMVEDPSTDSIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEGFLRGHKHLLKSIS 121
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KFK22685.1 122 RRKA 125
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-4029118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6130123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3531123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-3334123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDGEANLGEA VSAPPSRNPH PATLLNPNAL PPPFLSKTYD MVEDPSTDSI VSWSPTNNSF  60
IVWDPPEFSR DLLPKYFKHN NFSSFVRQLN TYGFKKVDPD KWEFANEGFL RGHKHLLKSI  120
SRRKAVQGHG SSVSRVTQGQ GSMAVSLSSC VEVGKFGLEE EVEQLKRDKN VLMQELVKLR  180
QQQQSTDNQL QSMVKRLQSM EQRQQQIMSF LAKAVQNPSF LSQFLQKQVD DSMRVSETNK  240
KRRLREDTNA ESSSAASDGQ IVKYQPVRSD SAKAMIWNIM NTDDDKFSSP NRVSGVTLQE  300
VLPTTSGQSS QAYVLPVPSN PHPDTVVSAI SQMPQMIRES INDIPTENYM DTTEKNVTEA  360
FISTSPFLDG GSVPVQLDGI SQDPDIDELM SNCDFLDEYL AQSPVLGDET LLDETLLENN  420
NTNGGNMDKL IEQLGFLTSE TELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-273212318120Heat shock factor protein 1
5d5u_B2e-273212327129Heat shock factor protein 1
5d5v_B2e-273212327129Heat shock factor protein 1
5d5v_D2e-273212327129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22685.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414192.10.0heat stress transcription factor A-1a
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLA0A087FYI30.0A0A087FYI3_ARAAL; Uncharacterized protein
STRINGA0A087FYI30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]