PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK22898.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bZIP

Protein Properties

Length: 244aa MW: 27937.5 Da PI: 7.5775

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK22898.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.3	1.2e-16	174	222	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ +l+e +k KFK22898.1 174 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLR-RLNEVEK 222 79****************************************.8888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-15	166	216	No hit	No description
SMART	SM00338	1.6E-11	170	226	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.197	172	216	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-13	174	217	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.75E-10	174	218	No hit	No description
CDD	cd14707	2.14E-22	174	219	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MNLDDLLKTV FSSETNQPPQ EATTTEERFS RQGSFTLPRD LSKKTVDEVW RDIQQDKNET 60 NTTTTTSTSH NKQPILGEIT LEDLLLKAGV VTETLQMPQD VVNVASNGPW IQYHQPPPHL 120 QQQQGFMSYP ICEMQEMVSP TSLMMCGLSD TQQALGRKRV GSSGGEIVEK TVERRQKRMI 180 KNRESAARSR ARKQAYTHEL EIKVSRLEEE NEKLRRLNEV EKILPSEPPP DPKWKLRRTS 240 STTF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK22898.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF334209	6e-90	AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBank	AJ420881	6e-90	AJ420881.1 Arabidopsis thaliana partial mRNA for basic leucine zipper transcription factor (atbzip12 gene).
GenBank	AK118113	6e-90	AK118113.1 Arabidopsis thaliana At2g41070 mRNA for putative bZIP transcription factor AtbZIP12 / DPBF4, complete cds, clone: RAFL19-38-L08.
GenBank	AY084668	6e-90	AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBank	BT025175	6e-90	BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411374.1	1e-125	ABSCISIC ACID-INSENSITIVE 5-like protein 3
Swissprot	Q9C5Q2	1e-114	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A087FZ46	1e-180	A0A087FZ46_ARAAL; Uncharacterized protein
STRING	A0A087FZ46	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	1e-94	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]