PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22972.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 212aa    MW: 24420.9 Da    PI: 7.7071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22972.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1632120298
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + v   ++++k++++++p  fa+  g+k   sk +tle++ g + ++kl  ++ ++++++++GW eF++a+ + eg f++F+++g+s+f  ++k+f+
  KFK22972.1  32 QLV--LPSAMKRNMMRIPTIFAKLKGSK--LSKFVTLETPLGFKRSIKL--KRIGEEIWFQEGWGEFAEAHSISEGHFLLFEYKGNSSF--HIKIFN 120
                 333..378888889********555655..889****************..**************************************..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2024124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-2124124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.33729122IPR003340B3 DNA binding domain
CDDcd100177.02E-1530120No hitNo description
SMARTSM010198.7E-1630122IPR003340B3 DNA binding domain
PfamPF023629.8E-1532120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVTTRKARAR AITASHHQPP AEPKSPVNKF FQLVLPSAMK RNMMRIPTIF AKLKGSKLSK  60
FVTLETPLGF KRSIKLKRIG EEIWFQEGWG EFAEAHSISE GHFLLFEYKG NSSFHIKIFN  120
VSACEIDYPR DTVHISDSDS DDEIIDLTDQ VFLEAQCTRK NEQSVNGGDL VHKPEKRPRD  180
IDFEKILDDV DAIKLLKEEE EDKRVFRGKQ FL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22972.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887460.17e-98B3 domain-containing protein At3g18960
SwissprotQ84R277e-89Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLA0A087FZC01e-155A0A087FZC0_ARAAL; B3 domain-containing protein
STRINGA0A087FZC01e-156(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.18e-86B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]