PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23146.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 236aa    MW: 27029.4 Da    PI: 5.4489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23146.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.41.1e-3961362127
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                 ++GfrF Pt++el+ +yL++++eg+   ++++vi+ +d++++eP++Lp+    ++++++++w+fF++r++++a+g r++r+t+sgyWkatg+  +v+sk
  KFK23146.1   6 TVGFRFYPTEDELIAFYLRNQLEGTIdESMHRVIPVLDVFEIEPSHLPNvageRCRGDSEQWFFFVPRQEREARGGRPSRTTSSGYWKATGSPGPVFSK 104
                 78**********************984555677***************646666666888*************************************** PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                 +++ +g+kkt+vfy g+ap+g+kt+  m+ey+
  KFK23146.1 105 DNRMIGVKKTMVFYIGKAPTGRKTKYKMNEYK 136
                 *******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-443162IPR003441NAC domain
PROSITE profilePS5100545.0195162IPR003441NAC domain
PfamPF023652.6E-217136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSEELTVGFR FYPTEDELIA FYLRNQLEGT IDESMHRVIP VLDVFEIEPS HLPNVAGERC  60
RGDSEQWFFF VPRQEREARG GRPSRTTSSG YWKATGSPGP VFSKDNRMIG VKKTMVFYIG  120
KAPTGRKTKY KMNEYKSVDE TDNFSTIPKL RHEYSLCRVY VTSGSSRAFD RRPMGDLQTE  180
RLILTRNVAA AETSSFRVES SPETSISGGE HVDLFLNTEM VDGLTEPIWD WEQLGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-31516720173NAC domain-containing protein 19
3swm_B3e-31516720173NAC domain-containing protein 19
3swm_C3e-31516720173NAC domain-containing protein 19
3swm_D3e-31516720173NAC domain-containing protein 19
3swp_A3e-31516720173NAC domain-containing protein 19
3swp_B3e-31516720173NAC domain-containing protein 19
3swp_C3e-31516720173NAC domain-containing protein 19
3swp_D3e-31516720173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126539.11e-151PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR31e-144NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A087FZU41e-175A0A087FZU4_ARAAL; Uncharacterized protein
STRINGA0A087FZU41e-176(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-146NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]