PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23373.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 648aa    MW: 72707 Da    PI: 6.7455
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23373.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1860115156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F++n++p+ ++r+ L++klgL+  ++k+WFqN+R+k k
  KFK23373.1  60 KKRYQRHTSSQIQEMEAFFKENPHPDDKQRTMLSEKLGLKPLKIKFWFQNKRTKIK 115
                 688999************************************************87 PP
2START34.64.5e-12217327398
                 HHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
       START   3 aeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
                 a ++ qel+k+ + +ep+W k        ++e+++  +  + e++ ++ ea+ra gvv+m++ +lv+++ld   +W+e +     +a++++ issg   
  KFK23373.1 217 AVSCVQELIKMCETNEPLWNKKEsllclnDEEYNKMFMCPLMEKDQFRREASRANGVVFMNSSTLVNSFLDAD-KWSELFCsivsRAKMVQIISSGvsg 314
                 67899**************9998899998555554444444444445**************************.****9999999***********888 PP

                 ...EEEEEEEEXX CS
       START  89 ...galqlmvael 98 
                    + +  ++ +l
  KFK23373.1 315 asgSLILSYKYKL 327
                 8865555555555 PP
3START60.94e-20348409146206
                 EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 146 ellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                 ++ pSg++i+++++g+s vtwvehv+++++++ h+++r  +++g+a+ga +w+a lqrqce+
  KFK23373.1 348 RRKPSGCIIQDMPDGYSHVTWVEHVEVEEKHVhHEMVREYIQTGAAFGADRWLAVLQRQCER 409
                 469*****************************9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1850118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1956123IPR009057Homeodomain-like
PROSITE profilePS5007116.3957117IPR001356Homeobox domain
SMARTSM003899.2E-1859121IPR001356Homeobox domain
CDDcd000861.40E-1660118No hitNo description
PfamPF000463.3E-1660115IPR001356Homeobox domain
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PROSITE profilePS5084824.064206412IPR002913START domain
SuperFamilySSF559612.33E-16207409No hitNo description
SMARTSM002344.7E-11215409IPR002913START domain
PfamPF018522.5E-7217329IPR002913START domain
PfamPF018523.4E-15348409IPR002913START domain
SuperFamilySSF559612.06E-8429608No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MYEEEEEDVV IYNSDNNILG SVSSSPTRTT TLNPNVSFVT MKEEYGLIAT GSDTLPPAKK  60
KRYQRHTSSQ IQEMEAFFKE NPHPDDKQRT MLSEKLGLKP LKIKFWFQNK RTKIKLQQDK  120
QENVMLREEN KALKIENQNL MSDLSHLSCS SCGSSGDKLR LENYNLRLQL NMLESIASFM  180
NPPLSLSQNT ICFFPEANNN NDISIAEEDK ASVMVLAVSC VQELIKMCET NEPLWNKKES  240
LLCLNDEEYN KMFMCPLMEK DQFRREASRA NGVVFMNSST LVNSFLDADK WSELFCSIVS  300
RAKMVQIISS GVSGASGSLI LSYKYKLHWY HQEKVTFFAS STTTEQYRRK PSGCIIQDMP  360
DGYSHVTWVE HVEVEEKHVH HEMVREYIQT GAAFGADRWL AVLQRQCERM VSLMATNVTD  420
LGVIPSLEAR KNLMRLSQRM VRLFCRNISD SYRESLSRST KDTVIVMSKK VRDGIVLCAV  480
TTTLLPCSHL QVFDLLRDNH HHHSQEILFN GNSIQELAHI ANGSHLGNCI SLLRNNLELI  540
LQETCTDNSG SLVVYSTVNP NAVQLAMNGE DLSKIPLLPL GVSIVPVNPS EGIFANSPSC  600
LLTVGIQVLT SKASAAKLDM STVTAISNRL SSTVNQITAA LGSSGLGN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004764.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG4
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLA0A087G0H10.0A0A087G0H1_ARAAL; Uncharacterized protein
STRINGA0A087G0H30.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]