PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK23426.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

GRAS

Protein Properties

Length: 419aa MW: 46997.2 Da PI: 6.9782

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK23426.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	447	1.3e-136	59	419	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +L +cA+avs+++l +a++++ +l+ ++s +g+p+qRl ay++e+L arla s+s++yk+l+++e + s + l+++ +++ev+P++kf+++ aN aI KFK23426.1 59 VLAACAKAVSDNNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPQ---SYQFLSYVYFLHEVCPYFKFGYMSANGAI 154 799************************************************************99...999********************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 ea++ e++vHiiDf+i+qG+QW+aL+qa+a+Rp+g+p++RiTg+g+ +l ++g+rL+k+A+++ vpf+fn+ v++++ d+++e+L+v++gEa KFK23426.1 155 AEAMKDEDKVHIIDFQIGQGTQWVALIQAFAARPRGAPNIRITGIGA-----GSNLVTVGKRLEKLANKFSVPFKFNA-VSRSICDVQVENLDVRKGEA 247 *******************************************.....889*******************.7*************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 l Vn++++lh+l+desvs+e++rd++L++vk+lsPkvv++veqe++ n+++Fl rfle+l+yy+a+f+s+++ lpr++++ri++E+++l+r++vn++ac KFK23426.1 248 LGVNFAFMLHHLPDESVSTENHRDSLLRMVKGLSPKVVTLVEQECNINTSPFLPRFLETLSYYTAMFESIDVMLPRNHKDRINIEQHCLARDVVNIIAC 346 *********************************************************************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 egaer+erhe l+kW++r+++aGF+p+pls+ + +++++llr ++ +gy vee++g+l+lgW++r Lvs +aW+ KFK23426.1 347 EGAERIERHELLGKWKSRFSMAGFQPYPLSSIVSATIRALLRDYN-NGYGVEERDGALYLGWMNRILVSSCAWK 419 *****************************************.9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.701	30	400	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-134	59	419	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDDIRGMRNN LGQVKTIMLP EIAESITDVV CHELSLWPQE ADDLLSIMEA ISRGDLKWVL 60 AACAKAVSDN NLLMARWCMG ELRGMVSISG EPIQRLGAYM LEGLVARLAA SGSSIYKSLQ 120 SREPQSYQFL SYVYFLHEVC PYFKFGYMSA NGAIAEAMKD EDKVHIIDFQ IGQGTQWVAL 180 IQAFAARPRG APNIRITGIG AGSNLVTVGK RLEKLANKFS VPFKFNAVSR SICDVQVENL 240 DVRKGEALGV NFAFMLHHLP DESVSTENHR DSLLRMVKGL SPKVVTLVEQ ECNINTSPFL 300 PRFLETLSYY TAMFESIDVM LPRNHKDRIN IEQHCLARDV VNIIACEGAE RIERHELLGK 360 WKSRFSMAGF QPYPLSSIVS ATIRALLRDY NNGYGVEERD GALYLGWMNR ILVSSCAWK

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDDIRGMRNN LGQVKTIMLP EIAESITDVV CHELSLWPQE ADDLLSIMEA ISRGDLKWVL  60
AACAKAVSDN NLLMARWCMG ELRGMVSISG EPIQRLGAYM LEGLVARLAA SGSSIYKSLQ  120
SREPQSYQFL SYVYFLHEVC PYFKFGYMSA NGAIAEAMKD EDKVHIIDFQ IGQGTQWVAL  180
IQAFAARPRG APNIRITGIG AGSNLVTVGK RLEKLANKFS VPFKFNAVSR SICDVQVENL  240
DVRKGEALGV NFAFMLHHLP DESVSTENHR DSLLRMVKGL SPKVVTLVEQ ECNINTSPFL  300
PRFLETLSYY TAMFESIDVM LPRNHKDRIN IEQHCLARDV VNIIACEGAE RIERHELLGK  360
WKSRFSMAGF QPYPLSSIVS ATIRALLRDY NNGYGVEERD GALYLGWMNR ILVSSCAWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-61	63	418	26	378	Protein SCARECROW
5b3h_A	4e-61	63	418	25	377	Protein SCARECROW
5b3h_D	4e-61	63	418	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK23426.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418535.1	0.0	scarecrow-like protein 21
Swissprot	Q9S7H5	0.0	SCL21_ARATH; Scarecrow-like protein 21
TrEMBL	A0A087G0M4	0.0	A0A087G0M4_ARAAL; Uncharacterized protein
STRING	A0A087G0M4	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM621	28	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	0.0	SCARECROW-like 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]