PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23906.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 199aa    MW: 23031.1 Da    PI: 6.9203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23906.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.99e-09142167630
                 HHHHHHHHHHHHHHHHHHHCTSCC.C CS
         HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                  ++ErrRR+r+N++++ Lr+++Pk  
  KFK23906.1 142 LMAERRRRKRLNDRLSMLRSIVPKiT 167
                 589********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-8129174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6142168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-7143173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEIGKQSNNL DTNNDCFMSM DQFVPSAWNF DYLCFDNPLQ EDNNIDHNTS SLMDLISQPP  60
PLLHQPPPSP PFSSTFDYSS LETLQDIIDS CYSPPPLTLQ ASQENNSSPL MEEESKSFMS  120
IGETNKKKSN YKKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKITKSK FHKPSLHFCF  180
SLKNVNSIFF LNYLWFFTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144151ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196619.13e-57basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LXA93e-58BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A087G2041e-143A0A087G204_ARAAL; Uncharacterized protein
STRINGA0A087G2041e-144(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.12e-57bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]