PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK24130.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 245aa MW: 28383.4 Da PI: 5.5948

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK24130.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	65.5	1.6e-20	9	160	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknra........tksgyWkatg 87 Gf+F+P ++el+++yL ++++g+++ ++i + ++y++ePw L+++++ +++ewy+F++r + ++ gk+++r+ +++g Wka KFK24130.1 9 EGFHFEPYEDELIKDYLIPELKGESCY--DFIVHKNVYDMEPWLLDHNMDPffQKNEWYYFVTRVQVSEkkigYGKQAKRKiagdnndgIERGNWKANA 105 59********************954..58999*******96554455889*998766653333577888866788888888*998 PP NAM 88 kdkevlskkgelvglkktLvfy.......kgrapkge.......ktdWvmheyrl 128 +++ +k+g+ +g k+tL++ ++++++g+ +++W+m ey l KFK24130.1 106 TTNIEDRKTGKIIGRKQTLTYTrsddnpkRQKREDGSsvivpgsESSWIMTEYML 160 865555558999******77766652233332234444449******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.538	7	177	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-23	8	175	IPR003441	NAC domain
Pfam	PF02365	6.6E-14	9	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSDYYEEDEG FHFEPYEDEL IKDYLIPELK GESCYDFIVH KNVYDMEPWL LDHNMDPFFQ 60 KNEWYYFVTR VQVSEKKIGY GKQAKRKIAG DNNDGIERGN WKANATTNIE DRKTGKIIGR 120 KQTLTYTRSD DNPKRQKRED GSSVIVPGSE SSWIMTEYML PEGENFQELV LCKIKIIRSK 180 KNHDHEAFTS TSTSIYHHHE TVLASSSSSD QQQINIDHEI NKSNNREASS SVTLKEGAKG 240 NDLGH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK24130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608285.1	7e-72	PREDICTED: NAC domain-containing protein 78-like
TrEMBL	A0A087G2M8	0.0	A0A087G2M8_ARAAL; Uncharacterized protein (Fragment)
STRING	A0A087G2M8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2607	13	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18300.1	4e-16	NAC domain containing protein 88