PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24186.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 382aa    MW: 43769.1 Da    PI: 9.8068
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24186.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57373.63.7e-23195283397
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  q++w +e e+++L G+i+fk+++gk p++ d+++fy  +++sis +v + +ql+eKi r+K K+    k         f+++hd k++el+k iWg
  KFK24186.1 195 YQKVWKDEEELLVLHGMIKFKNDKGKIPTKkDMEGFYCSIEESISNEVRSlRQLSEKISRMKYKYLCIGKS--------FTSAHDLKCLELAKVIWG 283
                 799***********************88877****************96549*************987776........*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-18196283IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAKKNKQVKN SEKKKKPVDN PAPVEDLSQV NISVVGTSKS KKRKPVDNPA LVGDFFQVKN  60
SVVETSKSKK RKPVKDPTPV EEDPAMQHAS HEDDLSQVNN SATPVYTTPN NHVVETSKSK  120
KRKSKKRKHA EDLAPVEYQA MMSSDDEMEI EIENKPKSDS ESDVKTGTKT ATVKSHDGGS  180
SEKEEEKTVS KPHLYQKVWK DEEELLVLHG MIKFKNDKGK IPTKKDMEGF YCSIEESISN  240
EVRSLRQLSE KISRMKYKYL CIGKSFTSAH DLKCLELAKV IWGPDALVKK SRKSEMSKKK  300
RKKMEEDDKE EVFEKSLLIR ALSNLKIETE ESLIRRWRMV DVEKRKEIEE TLKNLGDEKF  360
NFAMREMRIL YKALAEMDNA ST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216KKNKQVKNSEKKKKP
2298302KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087G2T40.0A0A087G2T4_ARAAL; Uncharacterized protein
STRINGA0A087G2T40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.12e-20DNA-binding storekeeper protein-related transcriptional regulator